This course is designed to provide both a solid understanding and practical experience in molecular dynamics (MD) simulations, which are increasingly vital in many scientific and engineering fields today. Students will learn the foundational principles of MD simulations and acquire the skills needed to design, execute, visualize, and analyze simulations. The course will also feature hands-on MD projects that tackle real-world challenges in chemical and biomolecular engineering, such as ion transport in battery applications and protein folding in biological systems.